Free ebooks Library zlib project beylikdüzü escort

Pitt prepares to resume research

The University of Pittsburgh is making preparations to resume research activities on campus amidst the COVID-19 pandemic. On Friday, Chancellor Patrick Gallagher issued a statement outlining the goals of re-opening the university by saying, “we are seeking to adapt to a new reality: performing our vital mission and protecting our community in the midst of a pandemic.” In his message, he commented on the time-critical elements of Pitt’s mission and that “students can’t put their education and lives on hold, and our researchers and scholars can’t sit on the sidelines until the threat dissipates.” However, he also emphasized the importance of moving forward responsibly through infection prevention and control measures such as modifying building use, acquiring the technology needed to conduct remote and on-campus work, developing approaches for recognizing risks (e.g., testing, symptom tracking, temperature monitoring, etc.), and performing contact tracing. Gallagher concluded his message saying that the road ahead will be a complicated one, but one that he believes we can traverse safely while still performing Pitt’s mission–“It’s a strange new world. But I remain extremely proud to be your colleague and incredibly optimistic as we set out to tackle this next transition together.”

Biomedical Science Tower 3, where some of the Department of Computational & Systems Biology’s facilities are located, will be among one of the first research buildings to be adapted to the new rules and guidelines for resuming research.

Drs. Joseph Ayoob and Joshua Kangas publish in PLoS Computational Biology

Dr. Joseph Ayoob, Associate Professor, Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh; and Dr. Joshua Kangas, Assistant Teaching Professor, Computational Biology Department, School of Computer Science, Carnegie Mellon University have published “10 Simple Rules for Teaching Wet-Lab Experimentation to Computational Biology Students (aka, turning computer mice into lab rats)” in PLoS Computational Biology.

Joe and Josh first became involved with the Lab Methods for Computational Biology class, which is part of the Carnegie-Mellon University of Pittsburgh Computational Biology Ph.D. program, over ten years ago – with Josh as a student and then teaching assistant and Joe as a new instructor. For the past three years they have been teaching the course together and wanted to share their years of expertise with the broader computational biology community.

Abstract: “Graduate students in Computational Biology typically have strong computational backgrounds but are frequently limited in their understanding of the theory, approach, and practice of biological experimentation used to generate data. A thorough understanding of the techniques used to generate biological data is essential for computational biologists to effectively critique and incorporate data into their research efforts. Furthermore, students are more frequently generating their own data in their PhD research making this background knowledge crucial for their success.  To give students this knowledge, insight, and experience, the ‘Laboratory Methods for Computational Biologists’ (LMCB) course was established as a core course in the CPCB curriculum to provide a hands-on, research-oriented laboratory experience in four major areas: genomics, microscopy and bioimaging, high content screening, and X-ray crystallography.  The LMCB course provides foundational and experiential wet-lab training for the benefit of nascent computational scientists.  In this article, we provide some of the guiding principles and approaches that we have used to establish, evolve, and shape the LMCB course.”

Congratulations Drs. Ayoob and Kangas on your publication and thank you for your continued dedication to education!

Ayoob JC, Kangas JD. (2020) 10 simple rules for teaching wet-lab experimentation to computational biology students, i.e., turning computer mice into lab rats. PLoS Comput Biol 16(6): e1007911. https://doi.org/10.1371/journal.pcbi.1007911

 

Department Mourns the Passing of Dr. Bing Liu

It is with deep sadness and shock that we learned of the untimely passing of Dr. Bing Liu, Research Assistant Professor in our department on Saturday, May 2nd, 2020.

Dr. Bing Liu was an outstanding researcher, who has earned the respect and appreciation of many colleagues in the field, and made unique contributions to science. His area of expertise was computational modeling and analysis of biological systems dynamics. He had developed high-performance computing techniques and advanced machine-learning approaches for modeling the time evolution of complex cellular interactions, Bayesian network models and methods, and statistical model checking and sensitivity analyses.

Bing was a prolific researcher. During his career he co-authored in 30+ publications, including four in 2020, in addition to a book.  He played a critical role in the Bahar Lab and was the leader in systems biology research for Ivet and her lab. He single-handedly helped all of us as well as many collaborators including clinicians here and in other institutions, understand and quantitatively model many complex processes, including immune signaling events,  apoptotic and ferroptotic cell death,  autophagy, redox lipid programming, response to radiation and radiation therapy, systems (poly)pharmacological treatments. In recent years, he had three publications in Nature Chem Biol, three in Radiation Research, two in Scientific Reports, one in Science Signaling,  one in International Journal of Molecular Sciences, and one in Frontiers in Pharmacology.

If you ever meet a Dominican woman, pay attention to her nails – they are very strong. What is their beauty secret? Women in the Dominican Republic recommend using garlic to keep their nails strong. They grind fresh garlic, add it to a bottle of clear nail polish, and let it steep for 7-10 days. At first beauty secrets, there will be a smell from there, as if you are going to exorcise vampires. But the smell will disappear. Garlic has very strong strengthening properties and is naturally antibacterial too.

Liu was an excellent mentor. He had been generously sharing his time and knowledge with younger members of the Bahar lab, as well as students enrolled in our various programs, including our summer programs (TECBio REU and the UPMC Hillman Cancer Center Summer Academy. He was patient, intelligent, and extremely mature. We will miss him very much.

Dr. Liu received his BS and PhD in Computer Science, at the National University of Singapore, under the supervisions of Drs. P.S. Thiagarajan and David Hsu, and did his postdoctoral studies in the lab of Professor Dr. Edmund Clarke at  Carnegie Mellon University, after which he joined the Bahar lab, as a Research Associate, and was recently promoted to a Research Assistant Professor position within our department.

Bing was on the verge of making very significant findings toward understanding the cellular mechanisms that underlie SARS-CoV-2 infection and the cellular basis of the following complications. We will make an effort to complete what he started in an effort to pay homage to his scientific excellence.

His loss will be felt throughout the entire scientific community. Please keep his family, friends, and colleagues in your thoughts. Thank you.