2021 Publications

Sorkina T, Cheng MH, Bagalkot TR, Wallace C, Watkins SC, Bahar I, & Sorkin A. (2021). Direct coupling of oligomerization and oligomerization-driven endocytosis of the dopamine transporter to its conformational mechanics and activity. J Biol Chem, 100430. doi:10.1016/j.jbc.2021.100430
Wacholder A, & Carvunis AR. (2021). New genes from borrowed parts. Science, 371(6531), 779-780. doi:10.1126/science.abf8493
Hrizo SL, Eicher SL, Myers TD, McGrath I, Wodrich APK, Venkatesh H, Vogt A . . . Palladino MJ. (2021). Identification of protein quality control regulators using a Drosophila model of TPI deficiency. Neurobiol Dis, 105299. doi:10.1016/j.nbd.2021.105299
Cillo AR, Somasundaram A, Shan F, Cardello C, Workman CJ, Kitsios GD, Benos PV . . . Vignali DAA. (2021). Bifurcated monocyte states are predictive of mortality in severe COVID-19. bioRxiv. doi:10.1101/2021.02.10.430499
Stewart-Ornstein J, Iwamoto Y, Miller MA, Prytyskach MA, Ferretti S, Holzer P, . . . Lahav G. (2021). p53 dynamics vary between tissues and are linked with radiation sensitivity. Nat Commun, 12(1), 898. doi:10.1038/s41467-021-21145-z
Meirovitch H, & Bahar I. (2021). Harold A. Scheraga (10/18/1921-8/1/2020): A pioneering scientist who laid the foundations of protein science in the 20th century. Proc Natl Acad Sci USA, 118(8). doi:10.1073/pnas.2026796118
Sun WY, Tyurin VA, Mikulska-Ruminska K, Shrivastava IH, Anthonymuthu TS, Zhai YJ,Bahar I . . . Kagan VE. (2021). Phospholipase iPLA(2)β averts ferroptosis by eliminating a redox lipid death signal. Nat Chem Biol. doi:10.1038/s41589-020-00734-x
Wang H, Pei F, Vanyukov MM, Bahar I, Wu W, & Xing E P. (2021). Coupled mixed model for joint genetic analysis of complex disorders with two independently collected data sets. BMC Bioinformatics, 22(1), 50. doi:10.1186/s12859-021-03959-2
Bhullar KS, Son M, Kerek E, Cromwell CR, Wingert BM, Wu K, Camacho CJ, . . . Wu J. (2021). Tripeptide IRW Upregulates NAMPT Protein Levels in Cells and Obese C57BL/6J Mice. J Agric Food Chem. doi:10.1021/acs.jafc.0c07831
Tripathi S, Xing J, Levine H, & Jolly MK (2021). Mathematical Modeling of Plasticity and Heterogeneity in EMT. Methods Mol Biol, 2179, 385-413. doi:10.1007/978-1-0716-0779-4_28
Sakolish C, Reese CE, Luo YS, Valdiviezo A, Schurdak ME, Gough A, Taylor DL . . . Rusyn I (2021). Analysis of reproducibility and robustness of a human microfluidic four-cell liver acinus microphysiology system (LAMPS). Toxicology, 448, 152651. doi:10.1016/j.tox.2020.152651
Ramanathan A, Ma H, Parvatikar A, & Chennubhotla SC (2021). Artificial intelligence techniques for integrative structural biology of intrinsically disordered proteins. Curr Opin Struct Biol, 66, 216-224. doi:10.1016/j.sbi.2020.12.001
Vakirlis N, Acar O, Hsu B, Coelho NC, Van Oss SB, Wacholder A, . . . Carvunis AR (2021). Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. Nat Commun, 12(1), 200. doi:10.1038/s41467-020-20609-y
Cárdenes N, Sembrat J, Noda K, Lovelace T, Álvarez D, Bittar HET, Benos PV . . . Rojas, M. (2021). Human ex vivo lung perfusion: a novel model to study human lung diseases. Sci Rep, 11(1), 490. doi:10.1038/s41598-020-79434-4
Zheng F, Zhang S, Churas C, Pratt D, Bahar I, & Ideker T (2021). HiDeF: identifying persistent structures in multiscale 'omics data. Genome Biol, 22(1), 21. doi:10.1186/s13059-020-02228-4
Noval Rivas M, Porritt RA, Cheng MH, Bahar I, & Arditi M (2021). COVID-19-associated multisystem inflammatory syndrome in children (MIS-C): A novel disease that mimics toxic shock syndrome-the superantigen hypothesis. J Allergy Clin Immunol, 147(1), 57-59. doi:10.1016/j.jaci.2020.10.008
Dagvadorj J, Mikulska-Ruminska K, Tumurkhuu G, Ratsimandresy RA, Carriere J, Andres AM,Bahar I . . . Arditi M (2021). Recruitment of pro-IL-1α to mitochondrial cardiolipin, via shared LC3 binding domain, inhibits mitophagy and drives maximal NLRP3 activation. Proc Natl Acad Sci U S A, 118(1). doi:10.1073/pnas.2015632118
Anthonymuthu TS, Tyurina YY, Sun WY, Mikulska-Ruminska K, Shrivastava IH, Tyurin VA, Bahar I . . . Kagan VE (2021). Resolving the paradox of ferroptotic cell death: Ferrostatin-1 binds to 15LOX/PEBP1 complex, suppresses generation of peroxidized ETE-PE, and protects against ferroptosis. Redox Biol, 38, 101744. doi:10.1016/j.redox.2020.101744

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