Structural Dynamics Software
Some rather rough C code for calculating equilibrium dynamics of proteins that are embedded in coarse-grained membranes can be found on my membrane ANM page. These methods are partially incorporated into ProDy.
Heterogeneity Analysis Software
I'm developing software for analysis of cellular heterogeneity. It's not quite ready for release, yet.
I have a variety of other little hacks that might be helpful to the world. I have to find them, though. To do that, I'll write a shell script to search for all of my old hacks...