2018 Publications

  Cheng MH, Kaya C, Bahar I (2018) A Quantitative Assessment of the Energetics of Dopamine Translocation by Human Dopamine Transporter. The Journal of Physical Chemistry B. doi: 10.1021/acs.jpcb.7b10340. PMID: 29232131
  Chauhan BK, Medsinge A, Baumgartner MP, Scanga HL, Kamakari S, Gajdosova E, Camacho CJ, Nischal KK (2018) Case series: Pyramidal cataracts, intact irides and nystagmus from three novel PAX6 mutationsAmerican Journal of Ophthalmology Case Reports 10 , 172-179
  Narayanan C, Bernard DN, Bafna K, Gagne D, Chennubhotla CS, Doucet N, Agarwal PK (2018) Conservation of Dynamics Associated with Biological Function in an Enzyme SuperfamilyStructure 26 (3), 426-436.e3
  Ponzoni L, Bahar I. 2018 Apr 17. Structural dynamics is a determinant of the functional significance of missense variants. Proceedings of the National Academy of Sciences. 115(16):4164-4169. doi: 10.1073/pnas.1715896115. Epub 2018 Apr 2. PMID: 29610305
  Uttam S, Liu Y. Methods. 2018 Mar 1. Fourier phase based depth-resolved nanoscale nuclear architecture mapping for cancer detection. 136:134-151. doi: 10.1016/j.ymeth.2017.10.011. Epub 2017 Nov 7. PMID: 29127043
  Keating SM, Taylor DL, Plant AL, Litwack ED, Kuhn P, Greenspan EJ, Hartshorn CM, Sigman CC, Kelloff GJ, Chang DD, Friberg G, Lee JSH, Kuida K. 2018 Mar 2. Opportunities and Challenges in Implementation of Multiparameter Single Cell Analysis Platforms for Clinical Translation. Clinical and Translational Science. doi: 10.1111/cts.12536. PMID: 29498218
  Beckwitt CH, Clark AM, Wheeler S, Taylor DL, Stolz DB, Griffith L, Wells A. 2018 Feb 1. Liver ‘organ on a chip’. Experimental Cell Research. 363(1):15-25. doi: 10.1016/j.yexcr.2017.12.023. Epub 2017 Dec 29. PMID: 29291400
  Krieger J, Lee JY, Greger IH, Bahar I. 2018 Feb 23. Activation and desensitization of ionotropic glutamate receptors by selectively triggering pre-existing motionsNeuroscience Letters. pii: S0304-3940(18)30132-0. doi: 10.1016/j.neulet.2018.02.050.
  Vineet K Raghu, Joseph D Ramsey, Alison Morris, Dimitrios V Manatakis, Peter Sprites, Panos K Chrysanthis, Clark Glymour, Panayiotis V Benos (2018) Comparison of strategies for scalable causal discovery of latent variable models from mixed dataInternational Journal of Data Science and Analytics, 1-13
Ji Young Lee, Zhiwei Feng, Xiang-Qun Sean Xie, Ivet Bahar (2018) Molecular Basis for the Functionality of γ-Secretase Inferred From Structure-Based Modeling and Druggability SimulationsBiophysical Journal 114 (3), 232a
Hongchun Li, Nanaocha Sharma, Ignacio J General, Joseph M Salvino, Gideon Schreiber, Ivet Bahar (2018) Dynamic Modulation of Binding as a Mechanism for Regulating Interferon SignalingBiophysical Journal 114 (3), 232a
Luca Ponzoni, Ivet Bahar (2018) Structural Dynamics is a Determinant of the Functional Significance of Missense VariantsBiophysical Journal 114 (3), 232a
Dong Zhou, Haiyan Fu, Liangxiang Xiao, Hongyan Mo, Hui Zhuo, Xiaojun Tian, Lin Lin, Jianhua Xing, Youhua Liu (2018) Fibroblast-Specific β-catenin Signaling Dictates the Outcome of AKIJournal of the American Society of Nephrology, ASN. 2017080903
Sanjana Gupta, Liam Hainsworth, Justin S Hogg, Robin EC Lee, James R Faeder (2018) Evaluation of Parallel Tempering to Accelerate Bayesian Parameter Estimation in Systems BiologyarXiv preprint arXiv:1801.09831
Victor C Wong, Victor L Bass, M Elise Bullock, Arvind K Chavali, Robin EC Lee, Walther Mothes, Suzanne Gaudet, Kathryn Miller-Jensen (2018) NF-κB-Chromatin Interactions Drive Diverse Phenotypes by Modulating Transcriptional NoiseCell reports 22 (3), 585-599
Alison M Nagle, Cemal Erdem, Kevin Levine, Christos Sotiriou, Otto Metzger, D Lans Taylor, Timothy Lezon, Steffi Oesterreich, Adrian V Lee (2018) Abstract B158: Exploiting IGF1R pathway activation as a therapeutic strategy for E-cadherin deficient breast cancersMolecular Cancer Therapeutics 17 (1 Supplement), B158-B158
Elizabeth Jurrus, Dave Engel, Keith Star, Kyle Monson, Juan Brandi, Lisa E Felberg, David H Brookes, Leighton Wilson, Jiahui Chen, Karina Liles, Minju Chun, Peter Li, David W Gohara, Todd Dolinsky, Robert Konecny, David R Koes, Jens Erik Nielsen, Teresa Head‐Gordon, Weihua Geng, Robert Krasny, Guo‐Wei Wei, Michael J Holst, J Andrew McCammon, Nathan A Baker (2018) Improvements to the APBS biomolecular solvation software suiteProtein Science 27 (1), 112-128
Jason A Hill, Ramprasad Neethiraj, Pasi Rastas, Nathan Clark, Nathan Morehouse, Maria de la Paz Celorio-Mancera, Jofre Carnicer Cols, Heinrich Dircksen, Camille Meslin, Kristin Sikkink, Maria Vives, Heiko Vogel, Christer Wiklund, Carol L Boggs, Soren Nylin, Christopher Wheat (2018) A butterfly chromonome reveals selection dynamics during extensive and cryptic chromosomal reshufflingbioRxiv, 233700
Nicolas A Pabon, Yan Xia, Samuel K Estabrooks, Zhaofeng Ye, Amanda K Herbrand, Evelyn Sub, Ricardo M Biondi, Victoria A Assimon, Jason E Gestwicki, Jeffrey L Brodsky, Carlos J Camacho, Ziv Bar-Joseph (2018) Proteome-scale detection of drug-target interactions using correlations in transcriptomic perturbationsbioRxiv, 254367
David R Koes, Alexander Dömling, Carlos J Camacho (2018) AnchorQuery: Rapid online virtual screening for small‐molecule protein–protein interaction inhibitors (2018). Protein Science 27 (1), 229-232
Bentley M Wingert, Rick Oerlemans, Carlos J Camacho (2018) Optimal affinity ranking for automated virtual screening validated in prospective D3R grand challengesJournal of computer-aided molecular design 32 (1), 287-297
Gau D, Lewis T, McDermott L, Wipf P, Koes D, Roy P (2018) Structure-based virtual screening identifies a small-molecule inhibitor of the profilin 1–actin interactionJournal of Biological Chemistry, jbc. M117. 809137.
Vineet K Raghu, Colin H Beckwitt, Katsuhiko Warita, Alan Wells, Panayiotis V Benos, Zoltan N Oltvai (2018) Biomarker identification for statin sensitivity of cancer cell lines (2018). Biochemical and biophysical research communications 495 (1), 659-665
Cihan Kaya, Mary H Cheng, Ethan R Block, Tom M Bartol, Terrence J Sejnowski, Alexander Sorkin, James R Faeder, Ivet Bahar (2018) Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake EfficiencyeNeuro 5 (1), ENEURO. 0298-17.2017
Jurrus E, Engel D, Star K, Monson K, Brandi J, Felberg LE, Brookes DH, Wilson L, Chen J, Liles K, Chun M, Li P, Gohara DW, Dolinsky T, Konecny R, Koes DR, Nielsen JE, Head-Gordon T, Geng W, Krasny R, Wei G-W, Holst MJ, McCammon JA, Baker NA (2018) Improvements to the APBS biomolecular solvation software suiteProtein Science 27 (1), 112-128

Other Years
‣ 2018 Publications
‣ 2017 Publications
‣ 2016 Publications
‣ 2015 Publications
2014 Publications
2013 Publications
2012 Publications
2011 Publications
‣ 2010 Publications
‣ 2009 Publications
2008 Publications
2007 Publications
2006 Publications
2005 Publications